Proteomic analysis of the spatio-temporal based molecular kinetics of acute spinal cord injury identifies a Time-and segment-specific window for effective tissue repair

CHOPRA, Manjeet - SHARMA, Jaidev - SINGH, Aditya A. - PATHAK, Zarna - VATS, Priyanka Patel - KUMAR, Vibhor - MANDOLI, Amit - KUMAR, Hemant. Paxillin mediates endothelial cell migration and angiogenesis following spinal cord injury: a transcriptomic and functional analysis. In MOLECULAR OMICS, 2026, vol. 22, no. 1, pp. Dostupné na: https://doi.org/10.1093/momics/aaiaf001.

MODARRESI, Farrokh - KAKA, Gholam Reza - RAEI, Mehdi - REZAEI-TAZANGI, Fatemeh. Therapeutic effectiveness of conditioned medium derived from adipose tissue mesenchymal stem cells and dehydroepiandrosterone in a rat model of spinal cord injury. In IBRO NEUROSCIENCE REPORTS, 2026, vol. 20, no., pp. 264-275. ISSN 2667-2421. Dostupné na: https://doi.org/10.1016/j.ibneur.2025.12.010.

ZHOU, Qiang - ZHAO, Zongren - TAN, Da - FANG, Chenhao - SHEN, Zhaoli - LI, Shun - CHEN, Xianzhen. Multi-omics technologies: Novel tools and methods for assessing nerve injury and regeneration. In NEURAL REGENERATION RESEARCH, 2026, vol. 21, no. 9, pp. 4051-4060. ISSN 1673-5374. Dostupné na: https://doi.org/10.4103/NRR.NRR-D-25-00610.

AQEL, Sarah - AHMAD, Jamil - SALEH, Iman - FATHIMA, Aseela - AL THANI, Asmaa A. - MOHAMED, Wael M.Y. - SHAITO, Abdullah A. Advances in Huntington’s Disease Biomarkers: A 10-Year Bibliometric Analysis and a Comprehensive Review. In Biology, 2025-02-01, 14, 2, pp. Dostupné na: https://doi.org/10.3390/biology14020129.

PENG, Run - ZHANG, Liang - XIE, Yongqi - GUO, Shuang - CAO, Xinqi - YANG, Mingliang. Spatial multi-omics analysis of the microenvironment in traumatic spinal cord injury: a narrative review. In Frontiers in Immunology, 2024-01-01, 15, pp. Dostupné na: https://doi.org/10.3389/fimmu.2024.1432841.

LIN, Ming-Wei - FANG, Shih-Yuan - HSU, Jung-Yu C. - HUANG, Chih-Yuan - LEE, Po-Hsuan - HUANG, Chi-Chen - CHEN, Hui-Fang - LAM, Chen-Fuh - LEE, Jung-Shun. Mitochondrial Transplantation Attenuates Neural Damage and Improves Locomotor Function After Traumatic Spinal Cord Injury in Rats. In FRONTIERS IN NEUROSCIENCE, 2022, vol. 16, no., pp. Dostupné na: https://doi.org/10.3389/fnins.2022.800883.

SÎRBULESCU, Ruxandra F. - ILIEŞ, Iulian - AMELUNG, Lisa - ZUPANC, Günther K.H. Proteomic characterization of spontaneously regrowing spinal cord following injury in the teleost fish Apteronotus leptorhynchus, a regeneration-competent vertebrate. In Journal of Comparative Physiology A: Neuroethology, Sensory, Neural, and Behavioral Physiology, 2022-11-01, 208, 5-6, pp. 671-706. ISSN 03407594. Dostupné na: https://doi.org/10.1007/s00359-022-01591-w.

WANG, Shengbo - GARCIA-SEISDEDOS, David R. - PRAKASH, Ananth - KUNDU, Deepti Jaiswal - COLLINS, Andrew - GEORGE, Nancy - FEXOVA, Silvie - MORENO, Pablo - PAPATHEODOROU, Irene - JONES, Andrew - VIZCAINO, Juan Antonio. Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. In PLOS COMPUTATIONAL BIOLOGY, 2022, vol. 18, no. 6, pp. ISSN 1553-734X. Dostupné na: https://doi.org/10.1371/journal.pcbi.1010174.

BIGHINATI, Andrea - KHALAJZEYQAMI, Zahra - BALDASSARRO, Vito Antonio - LORENZINI, Luca - CESCATTI, Maura - MORETTI, Marzia - GIARDINO, Luciana - CALZA, Laura. Time-Course Changes of Extracellular Matrix Encoding Genes Expression Level in the Spinal Cord Following Contusion Injury-A Data-Driven Approach. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2021, vol. 22, no. 4, pp.

CHEN, Wen-Hao - LIN, Yu-Xiang - LIN, Ling - ZHANG, Bao-Quan - XU, Shu-Xia - WANG, Wei. Identification of potential candidate proteins for reprogramming spinal cord-derived astrocytes into neurons: a proteomic analysis. In NEURAL REGENERATION RESEARCH. ISSN 1673-5374, 2021, vol. 16, no. 11, pp. 2257-2263.

FENG, Zhou - MIN, Lingxia - LIANG, Liang - CHEN, Beike - CHEN, Hui - ZHOU, Yi - DENG, Weiwei - LIU, Hongliang - HOU, Jingming. Neutrophil Extracellular Traps Exacerbate Secondary Injury via Promoting Neuroinflammation and Blood-Spinal Cord Barrier Disruption in Spinal Cord Injury. In FRONTIERS IN IMMUNOLOGY. ISSN 1664-3224, 2021, vol. 12, no., pp.

BUDAYEVA, Hanna G. - KIRKPATRICK, Donald S. Monitoring protein communities and their responses to therapeutics. In NATURE REVIEWS DRUG DISCOVERY. ISSN 1474-1776, 2020, vol. 19, no. 6, pp. 414-426.

SEKERA, Emily R. - SARASWAT, Darpan - ZEMAITIS, Kevin J. - SIM, Fraser J. - WOOD, Troy D. MALDI Mass Spectrometry Imaging in a Primary Demyelination Model of Murine Spinal Cord. In JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY. ISSN 1044-0305, 2020, vol. 31, no. 12, pp. 2462-2468.

DE MUNTER, J. P. - BEUGELS, J. - MUNTER, S. - JANSEN, L. - CILLERO-PASTOR, B. - MOSKVIN, O. - BROOK, G. - PAVLOV, D. - STREKALOVA, T. - KRAMER, B. W. - WOLTERS, E. Ch. Standardized human bone marrow-derived stem cells infusion improves survival and recovery in a rat model of spinal cord injury. In JOURNAL OF THE NEUROLOGICAL SCIENCES. ISSN 0022-510X, 2019, vol. 402, no., pp. 16-29.

FERNÁNDEZ-IRIGOYEN, Joaquín - CORRALES, Fernando - SANTAMARÍA, Enrique. The human brain proteome project: biological and technological challenges. In Methods in Molecular Biology. ISSN 10643745, 2019-01-01, 2044, pp. 3-23.

KIM, Youngkyung - PARK, Kyu-Won - OH, Jeonghwa - KIM, Junesun - YOON, Young Wook. Alterations in protein expression patterns of spinal peroxisome proliferator-activated receptors after spinal cord injury. In NEUROLOGICAL RESEARCH. ISSN 0161-6412, 2019, vol. 41, no. 10, pp. 883-892.

MALLAH, Khalil - QUANICO, Jusal - RAFFO-ROMERO, Antonella - CARDON, Tristan - ABOULOUARD, Soulaimane - DEVOS, David - KOBEISSY, Firas - ZIBARA, Kazem - SALZET, Michel - FOURNIER, Isabelle. Mapping Spatiotemporal Microproteomics Landscape in Experimental Model of Traumatic Brain Injury Unveils a link to Parkinson's Disease. In MOLECULAR & CELLULAR PROTEOMICS. ISSN 1535-9476, 2019, vol. 18, no. 8, pp. 1669-1682.

BIMBOVA, Katarina - BACOVA, Maria - KISUCKA, Alexandra - PAVEL, Jaroslav - GALIK, Jan - ZAVACKY, Peter - MARSALA, Martin - STROPKOVSKA, Andrea - FEDOROVA, Jana - PAPCUNOVA, Stefania - JACHOVA, Jana - LUKACOVA, Nadezda. A Single Dose of Atorvastatin Applied Acutely after Spinal Cord Injury Suppresses Inflammation, Apoptosis, and Promotes Axon Outgrowth, Which Might Be Essential for Favorable Functional Outcome. In INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES. ISSN 1422-0067, 2018, vol. 19, no. 4, pp.

GEDROVA, Stefania - GALIK, Jan - MARSALA, Martin - ZAVODSKA, Monika - PAVEL, Jaroslav - SULLA, Igor - GAJDOS, Miroslav - LUKAC, Imrich - KAFKA, Jozef - LEDECKY, Valent - SULLA, Igor - KARASOVA, Martina - REICHEL, Peter - TRBOLOVA, Alexandra - CAPIK, Igor - LUKACOVA, Viktoria - BIMBOVA, Katarina - BACOVA, Maria - STROPKOVSKA, Andrea - LUKACOVA, Nadezda. Neuroprotective effect of local hypothermia in a computer-controlled compression model in minipig: Correlation of tissue sparing along the rostro-caudal axis with neurological outcome. In EXPERIMENTAL AND THERAPEUTIC MEDICINE. ISSN 1792-0981, 2018, vol. 15, no. 1, pp. 254-270.

HUANG, Cheng - LEWIS, Caitlin - BORG, Natalie A. - CANALS, Meritxell - DIEP, Henry - DRUMMOND, Grant R. - GOODE, Robert J. - SCHITTENHELM, Ralf B. - VINH, Antony - ZHU, Mingyu - KEMP-HARPER, Barbara - KLEIFELD, Oded - STONE, Martin J. Proteomic Identification of Interferon-Induced Proteins with Tetratricopeptide Repeats as Markers of M1 Macrophage Polarization. In JOURNAL OF PROTEOME RESEARCH. ISSN 1535-3893, 2018, vol. 17, no. 4, pp. 1485-1499.